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Access to an adequate energy supply at reasonable cost is crucial for sustained economic growth. Unfortunately, oil prices and the need to import from politically unstable countries lowers the reliability of the US energy supply and hinders economic development. Although biofuels have been identified as an important component of the national strategy to decrease US dependence on foreign oil, the ability to sustain a rapid expansion of biofuel production capacity raises new research and policy issues. This document seeks to identify the most critical of these issues to help inform the policy development process. The goal is to enhance the long-term economic and environmental viability of the biofuel industry and its positive impact on agriculture, rural communities, and national security.

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Kenneth Cassman
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Co-author CESP senior fellow Harold A. Mooney details the dangerous impacts nitrogen-rich chemical fertilizers can have on the atmosphere and important watersheds. He asserts "the use of organic versus chemical fertilizers can play a role in reducing these adverse effects."

Organic farming has long been touted as an environmentally friendly alternative to conventional agriculture. A new study in the Proceedings of the National Academy of Sciences (PNAS) provides strong evidence to support that claim.

Writing in the March 6 online edition of PNAS, Stanford University graduate student Sasha B. Kramer and her colleagues found that fertilizing apple trees with synthetic chemicals produced more adverse environmental effects than feeding them with organic manure or alfalfa.

"The intensification of agricultural production over the past 60 years and the subsequent increase in global nitrogen inputs have resulted in substantial nitrogen pollution and ecological damage," Kramer and her colleagues write. "The primary source of nitrogen pollution comes from nitrogen-based agricultural fertilizers, whose use is forecasted to double or almost triple by 2050."

Nitrogen compounds from fertilizer can enter the atmosphere and contribute to global warming, adds Harold A. Mooney, the Paul S. Achilles Professor of Environmental Biology at Stanford and co-author of the study.

"Nitrogen compounds also enter our watersheds and have effects quite distant from the fields in which they are applied, as for example in contaminating water tables and causing biological dead zones at the mouths of major rivers," he says. "This study shows that the use of organic versus chemical fertilizers can play a role in reducing these adverse effects."

Nitrogen treatments

The PNAS study was conducted in an established apple orchard on a 4-acre site in the Yakima Valley of central Washington, one of the premiere apple-growing regions in the United States. Some trees used in the experiment had been raised with conventional synthetic fertilizers. Others were grown organically without pesticides, herbicides or artificial fertilization. A third group was raised by a method called integrated farming, which combines organic and conventional agricultural techniques.

"Conventional agriculture has made tremendous improvements in crop yield but at large costs to the environment," the authors write. "In response to environmental concerns, organic agriculture has become an increasingly popular option."

During the yearlong experiment, organically grown trees were fed either composted chicken manure or alfalfa meal, while conventionally raised plants were given calcium nitrate, a synthetic fertilizer widely used by commercial apple growers. Trees raised using the integrated system were given a blend of equal parts chicken manure and calcium nitrate.

Each tree was fertilized twice, in October and May, and given the same amount of nitrogen at both feedings no matter what the source-alfalfa, chicken manure, calcium nitrate or the manure/calcium nitrate blend.

Groundwater contamination

One goal of the PNAS experiment was to compare how much excess nitrogen leached into the soil using the four fertilizer treatments-one conventional, two organic (manure and alfalfa) and one integrated. When applied to the soil, nitrogen fertilizers release or break down into nitrates-chemical compounds that plants need to build proteins. However, excess nitrates can percolate through the soil and contaminate surface and groundwater supplies.

Besides having detrimental impacts on aquatic life, high nitrate levels in drinking water can cause serious illness in humans, particularly small children. According to the PNAS study, nearly one in 10 domestic wells in the United States sampled between 1993 and 2000 had nitrate concentrations that exceeded the Environmental Protection Agency's drinking water standards.

To measure nitrate levels during the experiment, water was collected in resin bags buried about 40 inches below the trees and then analyzed in the laboratory. The results were dramatic. "We measured nitrate leaching over an entire year and found that it was 4.4 to 5.6 times higher in the conventional treatment than in the two organic treatments, with the integrated treatment in between," says John B. Reganold, the Regents Professor of Soil Science at Washington State University and co-author of the study.

Nitrogen gas emissions

The research team also compared the amount of nitrogen gas that was released into the atmosphere by the four treatments. Air samples collected in the orchard after the fall and spring fertilizations revealed that organic and integrated soils emitted larger quantities of an environmentally benign gas called dinitrogen (N2) than soils treated with conventional synthetic fertilizer. One explanation for this disparity is that the organic and integrated soils contained active concentrations of denitrifying bacteria-naturally occurring microbes that convert excess nitrates in the soil into N2 gas. However, denitrifier microbial communities were much smaller and far less active and efficient in conventionally treated soils.

The research team also measured emissions of nitrous oxide (N2O)-a potent greenhouse gas that is 300 times more effective at heating the atmosphere than carbon dioxide gas, the leading cause of global warming. The results showed that nitrous oxide emissions were similar among the four treatments.

"We found that higher gas emissions from organic and integrated soils do not result in increased production of harmful nitrous oxide but rather enhanced emission of non-detrimental dinitrogen," Reganold says. "These results demonstrate that organic and integrated fertilization practices support more active and efficient denitrifier microbial communities, which may shift some of the potential nitrate leaching losses in the soil into harmless dinitrogen gas losses in the atmosphere."

Sustainable agriculture

Washington state produces more than half of the nation's apples. In 2004, the state crop was worth about $963 million, with organically grown apples representing between 5 and 10 percent of the total value. But the results of the PNAS study may apply to other high-value crops as well, according to the authors.

"This study is an important contribution to the debate surrounding the sustainability of organic agriculture, one of the most contentious topics in agricultural science worldwide," Reganold says. "Our findings not only score another beneficial point for organic agriculture but give credibility to the middle-ground approach of integrated farming, which uses both organic and conventional nitrogen fertilizers and other practices. It is this middle-ground approach that we may see more farmers adopting than even the rapidly growing organic approach."

Adds Mooney, "Organic farming cannot provide for all of our food needs, but it is certainly one important tool for use in our striving for sustainable agricultural systems. We need to explore and utilize all possible agricultural management techniques and technologies to reduce the very large global footprint of the needs to feed a population of over 6 billion people."

Other co-authors of the PNAS study are agroecologist Jerry D. Glover of the Land Institute in Salina, Kan., and Brendan J. M. Bohannan, associate professor of biological sciences at Stanford.

The study was funded by the U.S. Department of Agriculture, the National Science Foundation, the Land Institute and the Teresa Heinz Environmental Science and Policy Fellowship Program.

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Energy and Environment Building
473 Via Ortega
Stanford CA 94305

(650) 721-6207
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Professor, Earth System Science
Senior Fellow at the Freeman Spogli Institute for International Studies
Senior Fellow at the Stanford Woods Institute for the Environment
Senior Fellow at the Stanford Institute for Economic Policy Research (SIEPR)
Affiliate, Precourt Institute of Energy
shg_ff1a1284.jpg PhD

David Lobell is the Benjamin M. Page Professor at Stanford University in the Department of Earth System Science and the Gloria and Richard Kushel Director of the Center on Food Security and the Environment. He is also the William Wrigley Senior Fellow at the Stanford Woods Institute for the Environment, and a senior fellow at the Freeman Spogli Institute for International Studies (FSI) and the Stanford Institute for Economic Policy and Research (SIEPR).

Lobell's research focuses on agriculture and food security, specifically on generating and using unique datasets to study rural areas throughout the world. His early research focused on climate change risks and adaptations in cropping systems, and he served on the Intergovernmental Panel on Climate Change (IPCC) Fifth Assessment Report as lead author for the food chapter and core writing team member for the Summary for Policymakers. More recent work has developed new techniques to measure progress on sustainable development goals and study the impacts of climate-smart practices in agriculture. His work has been recognized with various awards, including the Macelwane Medal from the American Geophysical Union (2010), a Macarthur Fellowship (2013), the National Academy of Sciences Prize in Food and Agriculture Sciences (2022) and election to the National Academy of Sciences (2023).

Prior to his Stanford appointment, Lobell was a Lawrence Post-doctoral Fellow at Lawrence Livermore National Laboratory. He holds a PhD in Geological and Environmental Sciences from Stanford University and a Sc.B. in Applied Mathematics from Brown University.

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University of São Paulo, Brazil

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Visiting Professor, FSE
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Dr. Luiz Martinelli (Brazil) is an associate professor at the University of São Paulo in Brazil. His research into the ecology and geochemistry of the Amazon Basin has earned him recognition as one of Brazil's leading scientists in his field. In addition to publishing numerous papers in scientific journals, Dr. Martinelli has worked with both the International Geosphere-Biosphere Program and the Scientific Committee on Problems of the Environment.

Carnegie Institution
260 Panama Street
Stanford, CA, 94305-4150

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Associate Professor (by courtesy) of Biological Sciences
ss-pic.gif MS, PhD

Shauna Somerville's research program is focused on plant-pathogen interactions using the powdery mildew disease of Arabidopsis thaliana as a basis for study. Her research group studies nonhost resistance, which is defined operationally as resistance exhibited by all individuals of a plant species to all members of a given pathogen species. Unlike classical resistance deployed in plant breeding, nonhost resistance is both broad-spectrum in action and durable in the field. Analysis of this highly effective form of resistance has highlighted the importance the cell wall as the first line of defense against pathogen entry into plant cells. In addition, Shauna Somerville's lab was an early participant in the use of the microarray technology for gene expression profiling in plants, particularly in plant-pathogen interactions.

Shauna Somerville received her undergraduate training in Genetics (1976) and her M.Sc. in Plant Breeding (1978) at the University of Alberta, and her Ph.D. at the University of Illinois at Urbana-Champaign in Agronomy and Plant Physiology (1981). She has held positions concurrently at the DOE-Plant Research Laboratory and in the Department of Botany and Plant Pathology at Michigan State University (1982-1993), and is currently on staff at the Carnegie Institution, Department of Plant Biology (1994-present).

Shauna Somerville serves on the editorial boards of Genome Biology (1999-present) and Molecular Plant Pathology (2002-present). She also serves on the advisory boards for a number of plant genomics projects, including the Functional Genomics of Roots (2002-2006), the Functional Genomics of Grape Diseases Program in Chile (2002-2006), Rice Oligonucleotide Arrays (2004-2006) and Potato Functional Genomics (2005-2007). She was a Risø Fellow for Risø National Laboratory, Denmark (2002-2005) and currently serves on Genome Canada's Science and Industry Advisory Committee.

Staff Scientist, Department of Plant Biology, Carnegie Institution

473 Via Ortega, Y2E2, Room 255
Stanford, CA 94305-4020

(650) 725-9170
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Professor, Department of Civil and Environmental Engineering
jennadavis.jpg PhD

Jennifer (“Jenna”) Davis is a Professor in the Department of Civil and Environmental Engineering and the Higgins-Magid Senior Fellow at the Woods Institute for the Environment, both of Stanford University. She also heads the Stanford Program on Water, Health & Development. Professor Davis’ research and teaching is focused at the interface of engineered water supply and sanitation systems and their users, particularly in developing countries. She has conducted field research in more than 20 countries, including most recently Zambia, Bangladesh, and Uganda.

Higgins-Magid Faculty Senior Fellow, Stanford Woods Institute for the Environment

Dept. of Atmospheric Sciences
University of Washington
Box 351640
Seattle WA 98195-1640

(206) 543-2019 (206) 543-0306
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Tamaki Professor of Atmospheric Sciences, University of Washington
battisti_sm.jpg MS, PhD

David Battisti received a Ph.D. in Atmospheric Sciences (1988) from the University of Washington. He was an Assistant Professor at the University of Wisconsin until 1990. Since then, he has been on the Faculty in the Department of Atmospheric Sciences at the University of Washington, and was the Director of JISAO from 1997-2003. Presently, he is the Tamaki Professor of Atmospheric Sciences at the University of Washington and Director of the University's Earth Initiative.

David Battisti's research is focused on understanding the natural variability of the climate system. He is especially interested in understanding how the interactions between the ocean, atmosphere, land and sea ice lead to variability in climate on time scales from seasonal to decades. His previous research includes coastal oceanography, the physics of the El Nino/Southern Osciallation (ENSO) phenomenon, midlatitude atmosphere/ocean variability and variability in the coupled atmosphere/sea ice system in the Arctic. Battisti is presently working to improve the El Nino models and their forecast skill, and to understand the mechanisms responsible for the drought cycles in the Sahel, and the decade-to-decade changes in the climate of the Pacific Northwest, including how the latter affects the snow pack in the Cascades and coastal ranges from Washington to Alaska. He is also working on the impacts of climate variability and climate change on food production in Mexico and Indonesia.

Battisti's recent interests are in paleoclimate: in particular, the mechanisms responsible for the remarkable "abrupt" global climate changes evident throughout the last glacial period.

Battisti has served on numerous international science panels, on Committees of the National Research Council. He served for five years as co-chair of the Science Steering Committee for the U.S. Program on Climate (US CLIVAR) and is co-author of several international science plans. He has published over 60 papers in peer-review journals in atmospheric sciences and oceanography, and twice been awarded distinguished teaching awards.

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Rosamond L. Naylor
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This past autumn the Freeman Spogli Institute for International Studies (FSI) in conjunction with the Woods Institute for the Environment launched a program on Food Security and the Environment (FSE) to address the deficit in academia and, on a larger scale, the global dialogue surrounding the critical issues of food security, poverty, and environmental degradation.

"Hunger is the silent killer and moral outrage of our time; however, there are few university programs in the United States designed to study and solve the problem of global food insecurity," states program director Rosamond L. Naylor. "FSE's dual affiliation with FSI and the new Stanford Institute for the Environment position it well to make significant steps in this area."

Through a focused research portfolio and an interdisciplinary team of scholars led by Naylor and CESP (Center for Environmental Science and Policy) co-director Walter P. Falcon, FSE aims to design new approaches to solve these persistent and under-prioritized problems, expand higher education on food security and the environment at Stanford, and provide direct policy outreach.

Productive food systems and their environmental consequences are at the core of the program. While many of these systems are global in character, but they are influenced significantly by differing food objectives, income level, and instruments among nations. The program thus seeks to understand the food security issues that are of paramount interest to poor countries, the food diversification challenges that are a focus of middle-income nations, and the food safety and subsidy concerns prominent in richer nations.

Chronic hunger in a time of prosperity

Although the world's supply of basic foods has doubled over the past century, roughly 850 million people (12 percent of the world's population) suffer from chronic hunger. Food insecurity deaths during the past 20 years outnumber war deaths by a factor of at least 5 to 1. Food insecurity is particularly widespread in agricultural regions where resource scarcity and environmental degradation constrain productivity and income growth.

FSE is currently assessing the impacts of climate variability on food security in Asian rice economies. This ongoing project combines the expertise of atmospheric scientists, agricultural economists, and policy analysts to understand and mitigate the adverse effects of El Niño-related climate variability on rice production and food security under current and future global warming conditions. As a consequence of Falcon and Naylor's long-standing roles as policy advisors in Indonesia, models developed through this project have already been embedded into analytical units within Indonesia's Ministry of Agriculture, the Planning Ministry, and the Ministry of Finance.

"With such forecasts in hand, the relevant government agencies are much better equipped to mitigate the negative consequences of El Niño events on incomes and food security in the Indonesian countryside," explain Falcon and Naylor.

Food diversification and intensification

With rapid income growth, urbanization, and population growth in developing economies, priorities shift from food security to the diversification of agricultural production and consumption. "Meat production is projected to double by 2020" states Harold A. Mooney, CESP senior fellow and an author of the Millennium Ecosystem Assessment. "In China alone, meat consumption has more than doubled in the past generation." As a result, land once used to provide grains for humans now provides feed for hogs and poultry.

These trends will have major consequences on the global environment-affecting the quality of the atmosphere, water, and soil due to nutrient overloads; impacting marine fisheries both locally and globally through fish meal use; and threatening human health, as, for example, through excessive use of antibiotics.

An FSE project is looking at these trends as it relates to intensive livestock production and assessing the environmental impacts to gain a better understanding of the true costs of this resource-intensive system. A product of this work recently appeared as a Policy Forum piece in the December 9, 2005, issue of Science titled "Losing the Links Between Livestock and Land".

Numerous factors have contributed to the global growth of livestock systems, lead author Naylor notes, including declining feed-grain prices, relatively inexpensive transportation costs, and trade liberalization. "But many of the true costs remain largely unaccounted for," she says. Those costs include destruction of forests and grasslands to provide farmland for corn, soybeans, and other feed crops destined not directly for humans but for livestock; utilization of large quantities of freshwater; and nitrogen losses from croplands and animal manure.

Naylor and her research team are seeking better ways to track all costs of livestock production, especially the hidden ones related to ecosystem degradation and destruction. "What is needed is a re-coupling of crop and livestock systems," Naylor says. "If not physically, then through pricing and other policy mechanisms that reflect social costs of resource use and ecological abuse."

Such policies "should not significantly compromise the improving diets of developing countries, nor should they prohibit trade," Naylor adds. Instead, they should "focus on regulatory and incentive-based tools to encourage livestock and feed producers to internalize pollution costs, minimize nutrient run-off, and pay the true price of water."

Looking ahead

The future of the program on Food Security and the Environment looks bright, busy, and expansive. While a varied portfolio of projects is in line for the upcoming year, a strong emphasis remains in the area of food security. Building on existing research at Stanford, researchers are identifying avenues for enhancing orphan crop production in the world's least developed countries-crops with little international trade and investment, but with high local value in terms of food and nutrition security. The work seeks to identify advanced genetic and genomic strategies, along with natural resource management strategies, to improve orphan crop yields and stability, enhance crop diversity, and increase rural incomes through orphan crop production.

Another priority area of research centers on the development of biofuels. Biofuels are becoming increasingly a part of the policy set for world food and agriculture. As countries such as the United States seek energy self-reliance and look for alternatives to food and feed subsidies under WTO (World Trade Organization) rules, the conversion of corn, sugar, and soybeans to ethanol and other energy sources becomes more attractive. New extraction methods are making the technology more efficient, and crude oil prices at $60 per barrel are fundamentally changing the economics of biomass energy conversion. A large switch by key export food and feed suppliers, such as the United States and Brazil, to biofuels could fundamentally alter export prices, and hence the world food and feed situation. A team of FSE researchers will assess the true costs of these conversions.

The FSE program recently received a grant through the Presidential Fund for Innovation in International Studies to initiate new interdisciplinary research activities. One such project links ongoing research at Stanford on the environmental and resource costs of industrial livestock production and trade to assess the extent and rate of Brazil's rainforest destruction for soybean production. "Tens of millions of hectares of native grassland and rainforest are currently being cleared for soybean production to supply the global industrial livestock sector," says Naylor. A significant share of Brazil's soybeans is being shipped to China, where rapid income growth is fueling tremendous increases in meat consumption."

A team of remote-sensing experts, ecologists, agronomists, and economists will be looking at the ecological effects on the landscape through biogeochemical changes and biodiversity loss, the impacts of land clearing on the regional hydrologic cycle and climate change, the economic patterns of trade, and the role of policies to achieve an appropriate balance between agricultural commodity trade, production practices, and conservation in Brazil's rainforest states.

"I'm extremely pleased to see the rapid growth of FSE and am encouraged by the recent support provided through the Presidential Fund for Innovation in International Studies," states Naylor. "It enables the program to engage faculty members from economics, political science, biology, civil and environmental engineering, earth sciences, and medicine-as well as graduate students throughout the university-in a set of collaborative research activities that could significantly improve human well-being and the quality of the environment."

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"Feeding the World in the 21st Century: Exploring the Connections Between Food Production, Health, Enviromental Resources and International Security," was one of eight projects to be be awarded.

Eight research projects led by multidisciplinary-faculty teams have jointly received $1.05 million in the first round of awards made by Stanford's new $3 million Presidential Fund for Innovation in International Studies.

Coit D. Blacker, director of the Freeman Spogli Institute for International Studies, said the fund is the first program launched by the university's International Initiative, which seeks to encourage collaborative, cross-disciplinary approaches to address the global challenges of pursuing peace and security, improving governance and advancing human well-being.

The multi-year projects, selected by the International Initiative's executive committee from 37 proposals, will bring together faculty from fields that traditionally do not collaborate to produce new courses, symposia, conferences and research papers. Blacker, who chairs the executive committee, said additional awards totaling about $2 million will be made in 2007 and 2008.

President John Hennessy said he supports the research projects. "The world does not come to us as neat disciplinary problems, but as complex interdisciplinary challenges," he said. "The collaborative proposals we have selected for this first round of funding offer great potential to help shed light on some of the most persistent and pressing political issues on the global agenda today."

Projects in the first round of funding include:

Governance under Authoritarian Rule. Stephen Haber and Beatriz Magaloni, political science; Ian Morris, classics, history; and Jennifer Trimble, classics. The researchers will examine the political economy of authoritarian systems and determine why some authoritarian governments are able to make the transition to democracy, stable growth and functioning institutions, while others prove predatory and unstable.

Addressing Institutional and Interest Conflicts: Project Governance Structures for Global Infrastructure Development. Raymond Levitt, civil and environmental engineering; Doug McAdam and W. Richard Scott, sociology. The project will analyze the challenges of creating efficient and effective public/private institutions for the provision of low-cost, distributed and durable infrastructure services in emerging economies.

Combating HIV/AIDS in Southern Africa: The Treatment Revolution and Its Impact on Health, Well-Being and Governance. David Katzenstein, infectious diseases; and Jeremy Weinstein, political science. Based on the 2005 Group of 8's commitment to put 10 million people infected with HIV/AIDS on treatment within five years, this project will research the impact of this treatment revolution on health, well-being and governance in sub-Saharan Africa.

Evaluating Institutional Responses to Market Liberalization: Why Latin America Was Left Behind. Judith Goldstein, political science; Avner Greif, economics; Steven Haber, political science; Herb Klein, history; H. Grant Miller, Freeman Spogli Institute (FSI)/medicine; and Barry Weingast, political science. The project will research the interaction between inequality and Latin American institutions in explaining the poor economic performance of countries in the region during the past two decades, examining why reforms such as trade liberalization have failed to yield expected results.

Feeding the World in the 21st Century: Exploring the Connections Between Food Production, Health, Environmental Resources and International Security. Rosamond L. Naylor, FSI/economics; Stephen J. Stedman, FSI/political science; Peter Vitousek, biological sciences; and Gary Schoolnik, medicine, microbiology and immunology. The group will launch a new research and teaching program, titled "Food Security and the Environment," with an initial priority on determining linkages between food security, health and international security, and globalization, agricultural trade and the environment.

The Political Economy of Cultural Diversity. James D. Fearon, political science; and Romain Wacziarg, Graduate School of Business. The researchers will assess the impact of ethnic, linguistic and religious diversity on economic growth, trade and capital flows, governance, development of democracy and political stability.

In addition, two grants to plan forthcoming research projects have received $25,000:

Global Health by Design. Geoffrey Gurtner, plastic and reconstructive surgery; David Kelley, mechanical engineering; Thomas Krummel, surgery; Julie Parsonnet, medicine, health research and policy; and Paul Yock, medicine, bioengineering. The group will design a project to examine how new technology can be used to develop effective, affordable and sustainable methods and devices to prevent disease in the world's poorest countries.

Ecological Sanitation in Rural Haiti: An Interdisciplinary Approach to Sanitation and Soil Fertility. Ralph Greco, surgery; and Rodolfo Dirzo, biological sciences. The researchers will develop a plan to test the efficacy of ecological sanitation in decreasing disease and enhancing soil fertility in rural Haiti.

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If aquaculture is to play a responsible role in the future of seafood here at home, we must ensure that the "blue revolution" in ocean fish farming does not cause harm to the oceans and the marine life they support. The ratio of wild fisheries inputs to farmed fish output has fallen to 0.63 for the aquaculture sector as a whole but remains as high as 5.0 for Atlantic salmon.

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