FSE Publications

High resolution crop type maps are an important tool for improving food security, and remote sensing is increasingly used to create such maps in regions that possess ground truth labels for model training. However, these labels are absent in many regions, and models trained in other regions on typical satellite features, such as those from optical sensors, often exhibit low performance when transferred. Here we explore the use of NASA's Global Ecosystem Dynamics Investigation (GEDI) spaceborne lidar instrument, combined with Sentinel-2 optical data, for crop type mapping. Using data from three major cropped regions (in China, France, and the United States) we first demonstrate that GEDI energy profiles are capable of reliably distinguishing maize, a crop typically above 2m in height, from crops like rice and soybean that are shorter. We further show that these GEDI profiles provide much more invariant features across geographies compared to spectral and phenological features detected by passive optical sensors. GEDI is able to distinguish maize from other crops within each region with accuracies higher than 84\%, and able to transfer across regions with accuracies higher than 82\% compared to 64\% for transfer of optical features. Finally, we show that GEDI profiles can be used to generate training labels for models based on optical imagery from Sentinel-2, thereby enabling the creation of 10m wall-to-wall maps of tall versus short crops in label-scarce regions. As maize is the second most widely grown crop in the world and often the only tall crop grown within a landscape, we conclude that GEDI offers great promise for improving global crop type maps.

Crop type mapping at the field level is critical for a variety of applications in agricultural monitoring, and satellite imagery is becoming an increasingly abundant and useful raw input from which to create crop type maps. Still, in many regions crop type mapping with satellite data remains constrained by a scarcity of field-level crop labels for training supervised classification models. When training data is not available in one region, classifiers trained in similar regions can be transferred, but shifts in the distribution of crop types as well as transformations of the features between regions lead to reduced classification accuracy. We present a methodology that uses aggregate-level crop statistics to correct the classifier by accounting for these two types of shifts. To adjust for shifts in the crop type composition we present a scheme for properly reweighting the posterior probabilities of each class that are output by the classifier. To adjust for shifts in features we propose a method to estimate and remove linear shifts in the mean feature vector. We demonstrate that this methodology leads to substantial improvements in overall classification accuracy when using Linear Discriminant Analysis (LDA) to map crop types in Occitanie, France and in Western Province, Kenya. When using LDA as our base classifier, we found that in France our methodology led to percent reductions in misclassifications ranging from 2.8% to 42.2% (mean = 21.9%) over eleven different training departments, and in Kenya the percent reductions in misclassification were 6.6%, 28.4%, and 42.7% for three training regions. While our methodology was statistically motivated by the LDA classifier, it can be applied to any type of classifier. As an example, we demonstrate its successful application to improve a Random Forest classifier.

Crop productivity is potentially affected by several air pollutants, although these are usually studied in isolation. A significant challenge to understanding the effects of multiple pollutants in many regions is the dearth of air quality data near agricultural fields. Here we empirically estimate the effect of four key pollutants (ozone (O3), particulate matter (PM), sulfur dioxide (SO2), and nitrogen dioxide (NO2)) on maize and soybean yields in the United States using a combination of administrative data and satellite-derived yield estimates. We identify clear negative effects of exposure to O3, PM, and SO2 in both crops, using yields measured in the vicinity of monitoring stations. We also show that while stations measuring NO2 are too sparse to reliably estimate a yield effect, the strong gradient of NO2 concentrations near power plants allows us to more precisely estimate NO2 effects using satellite measured yield gradients. The presence of some powerplants that turn on and others that shut down during the study period are particularly useful for attributing yield gradients to pollution. We estimate that total yield losses from these pollutants averaged roughly 5% for both maize and soybean over the past two decades. While all four pollutants have statistically significant effects, PM and NO2 appear more damaging to crops at current levels than O3 and SO2. Finally, we find that the significant improvement in air quality since 1999 has halved the impact of poor air quality on major crops and contributed to yield increases that represent roughly 20% of overall yield gains over that period.

Quantification of the sector-specific financial impacts of historical global warming represents a critical gap in climate change impacts assessment. The multiple decades of county-level data available from the U.S. crop insurance program – which collectively represent aggregate damages to the agricultural sector largely borne by U.S. taxpayers – present a unique opportunity to close this gap. Using econometric analysis in combination with observed and simulated changes in county-level temperature, we show that global warming has already contributed substantially to rising crop insurance losses in the U.S. For example, we estimate that county-level temperature trends have contributed $US2017 23.9 billion – or 17% – of the national-level crop insurance losses over the 1991-2017 period. Further, we estimate that observed warming contributed approximately one third of total losses in the most costly single year (2012). In addition, analyses of a large suite of global climate model simulations yield very high confidence that anthropogenic climate forcing has increased U.S. crop insurance losses. These sector-specific estimates provide important quantitative information about the financial costs of the global warming that has already occurred (including the costs of individual extreme events), as well as the economic value of mitigation and/or adaptation options.

The sustainability of aquaculture has been debated intensely since 2000, when a review on the net contribution of aquaculture to world fish supplies was published in Nature. This paper reviews the developments in global aquaculture from 1997 to 2017, incorporating all industry sub-sectors and highlighting the integration of aquaculture in the global food system. Inland aquaculture—especially in Asia—has contributed the most to global production volumes and food security. Major gains have also occurred in aquaculture feed efficiency and fish nutrition, lowering the fish-in–fish-out ratio for all fed species, although the dependence on marine ingredients persists and reliance on terrestrial ingredients has increased. The culture of both molluscs and seaweed is increasingly recognized for its ecosystem services; however, the quantification, valuation, and market development of these services remain rare. The potential for molluscs and seaweed to support global nutritional security is underexploited. Management of pathogens, parasites, and pests remains a sustainability challenge industry-wide, and the effects of climate change on aquaculture remain uncertain and difficult to validate. Pressure on the aquaculture industry to embrace comprehensive sustainability measures during this 20-year period have improved the governance, technology, siting, and management in many cases.

Recent years have witnessed rapid growth in satellite-based approaches to quantifying aspects of land use, especially those monitoring the outcomes of sustainable development programs. Burke et al. reviewed this recent progress with a particular focus on machine-learning approaches and artificial intelligence methods. Drawing on examples mostly from Africa, they conclude that satellite-based methods enhance rather than replace ground-based data collection, and progress depends on a combined approach.

Crop yield maps estimated from satellite data increasingly are used to understand drivers of yield trends and variability, yet satellite-derived regional maps are rarely compared with location-specific yields due to the difficulty of acquiring sub-field ground truth data at scale. In commercial agricultural systems, combine harvesters with onboard yield monitors collect real-time yield data during harvest with high spatial resolution, generating a large ground dataset. Here, we leveraged a yield monitor dataset of over one million maize field observations across the United States Corn Belt from 2008 to 2018 to evaluate the Scalable Crop Yield Mapper (SCYM). SCYM uses region-specific crop model simulations and climate data to interpret vegetation indices from satellite observations, thus enabling efficient sub-field yield estimation across large regions and multiple years without reliance on ground data calibration. We used the ground dataset to compare alternative SCYM model implementations, define minimum required satellite observation criteria, and evaluate the sensitivity of satellite-based yield estimates to on-the-ground variation in management, soil, and annual weather. We found that smoothing annual time series data with harmonic regression increased 30 m pixel-level accuracy from r2 = 0.31 to 0.40 and reduced dependency on specific satellite observation timing, enabling robust yield estimation on 97% of annual maize area using only Landsat data. Agreement improved as the assessment was aggregated to field-level (r2 = 0.45) and county-level (r2 = 0.69) scales, demonstrating the need for fine-resolution ground truth data to better assess sub-field level accuracy in high resolution products. We found that SCYM and ground data showed a similar yield response to management and environmental variation, particularly capturing linear and nonlinear responses to sowing density, soil water holding capacity, and growing season precipitation. However, sensitivity to factors like soil quality and planting date was muted for SCYM estimates compared to ground-based yields. Random forest models were able to match SCYM performance when trained on at least 1000 ground observations, but performed poorly when tested on years and locations not represented in the training data. Our results demonstrate that satellite yield maps can provide much-needed information on multidecadal yield trends and inform yield gap analyses.

The increasing availability of satellite data at higher spatial, temporal and spectral resolutions is enabling new applications in agriculture and economic development, including agricultural insurance. Yet, effectively using satellite data in this context requires blending technical knowledge about their capabilities and limitations with an understanding of their influence on the value of risk-reduction programmes. In this Review, we discuss how approaches to estimate agricultural losses for index insurance have evolved from costly field-sampling-based campaigns towards lower-cost techniques using weather and satellite data. We identify advances in remote sensing and crop modelling for assessing agricultural conditions, but reliably and cheaply assessing production losses remains challenging in complex landscapes. We illustrate how an economic framework can be used to gauge and enhance the value of insurance based on earth-observation data, emphasizing that even as yield-estimation techniques improve, the value of an index insurance contract for the insured depends largely on how well it captures the losses when people suffer most. Strategically improving the collection and accessibility of reliable ground-reference data on crop types and production would facilitate this task. Audits to account for inevitable misestimation complement efforts to detect and protect against large losses.